Research data policies

Mandated data types

For the following data types submission to a community-endorsed, public repository is mandatory. Persistent identifiers (DOIs and accession numbers) assigned to the data by the repository must be appropriately cited and referenced in the published article.

Data typesRepository options

DNA sequence data*

RNA sequence data*

Genome assembly data*

Any INSDC member repository

Genome Sequence Archive (GSA)

  

Protein sequence data

Uniprot

  

Proteomics data

Any ProteomeXchange member repository

  

Genetic variation data

dbSNP (human variations less than 50bp)

dbVar (human variations greater than 50bp)

European Variation Archive (EVA) (all species)

Genome Sequence Archive for Human (human variation)
  

Functional genomics data

dbGAP

ClinVAR

The European Genome-phenome Archive (EGA)

  

Macromolecular structure data

Worldwide Protein Data Bank (wwPDB)

Biological Magnetic Resonance Data Bank (BMRB)

Electron Microscopy Data Bank (EMDB)

  

Gene expression data

Gene Expression Omnibus (GEO)

ArrayExpress

  

Crystallographic data for small molecules

Crystallography Open Database (COD)

*Novel DNA sequence, novel RNA sequence, and novel genome assembly data must be deposited to repositories that are part of the International Nucleotide Sequence Collaboration (INSDC), or those which are working towards INSDC inclusion (as listed in the table), unless there are privacy or ethics restrictions that prevent open sharing of such data. Novel DNA sequence, novel RNA sequence, and novel genome assembly data may in addition be deposited to any other repository (including regional or national repositories) as required.